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Genetic Test: Alpha and Beta Thalassemia | |
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Description: |
Alpha thalassemia represents a group of clinical syndromes of varying severity characterized by hemolytic anemia and ineffective hematopoiesis. Genetic defects in any or all of four alpha globin genes are causative of these syndromes. Rates of variants in the alpha thalassemia gene vary across ethnic groups and are highest in individuals from Southeast Asia, Africa, and the Mediterranean region.
Alpha-thalassemia is a common genetic disorder, affecting approximately 5% of the world's population (Vichinsky, 2010). The frequency of variants is highly dependent on ethnicity, with the highest rates seen in Asians, and much lower rates in Northern Europeans. The carrier rate is estimated to be 1 in 20 in Southeast Asians, 1 in 30 for Africans, and between 1 in 30 and 1 in 50 for individuals of Mediterranean ancestry. By contrast, for individuals of northern European ancestry, the carrier rate is less than 1 in 1000.
Hemoglobin, which is the major oxygen carrying protein molecule of red blood cells, consists of two alpha globin chains and two beta globin chains. Alpha-thalassemia refers to a group of syndromes that arise from deficient production of alpha globin chains. Deficient alpha globin production leads to an excess of beta globin chains, which results in anemia by a number of mechanisms (Muncie, 2009):
The physiologic basis of alpha thalassemia is a genetic defect in the genes coding for alpha globin production. Each individual carries four genes that code for alpha globin (2 copies each of HBA1 and HBA2, located on chromosome 16), with the wild genotype (normal) being aa/aa. Genetic variants may occur in any or all of these four alpha globin genes. The number of genetic variants determines the phenotype and severity of the alpha thalassemia syndromes. The different syndromes are classified as follows:
Genetic testing
A number of different types of genetic abnormalities are associated with alpha-thalassemia. More than one hundred different genetic variants have been described. Deletion of one or more of the alpha globin chains is the most common genetic defect. This is the type of genetic defect found in approximately 90% of cases (Mayo Medical Laboratories, 2013). Large genetic rearrangements can also occur from defects in crossover and/or recombination of genetic material during reproduction. Single nucleotide variants in one or more of the alpha genes can occur that impair transcription and/or translation of the alpha globin chains.
Testing is commercially available through several genetic labs. Targeted variant analysis for known α-globin gene variants can be performed by polymerase chain reaction (PCR). PCR can also be used to identify large deletions or duplications. Newer testing methods have been developed to facilitate identification of α-thalassemia variants, such as multiplex amplification methods and real-time PCR analysis (Fallah, 2010; Lacerra, 2007; Grimholt, 2014). In patients with suspected α-thalassemia and a negative PCR test for genetic deletions, direct sequence analysis of the α-globin locus is generally performed to detect single nucleotide variants (Origa, 2016).
Regulatory Status
Clinical laboratories may develop and validate tests in-house and market them as a laboratory service; laboratory-developed tests must meet the general regulatory standards of the Clinical Laboratory Improvement Amendments. Genetic testing for alpha thalassemia is available under the auspices of the Clinical Laboratory Improvement Amendments. Laboratories that offer laboratory-developed tests must be licensed by the Clinical Laboratory Improvement Amendments for high-complexity testing. To date, the U.S. Food and Drug Administration has chosen not to require any regulatory review of this test.
Coding
There is a Tier 1 molecular pathology CPT code for testing for common deletions or variants:
81257 - HBA1/HBA2 (alpha globin 1 and alpha globin 2) (e.g., alpha thalassemia, Hb Bart hydrops fetalis syndrome, HbH disease), gene analysis, for common deletions or variant (e.g., Southeast Asian, Thai, Filipino, Mediterranean, alpha3.7, alpha4.2, alpha20.5, and Constant Spring)
There is also a Tier 2 molecular pathology CPT code which includes relevant testing:
Code 81404 includes:
HBA1/HBA2 (alpha globin 1 and alpha globin 2) (e.g., alpha thalassemia), duplication/deletion analysis
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Policy/ Coverage: |
Effective January 2024
Meets Primary Coverage Criteria Or Is Covered For Contracts Without Primary Coverage Criteria
Preconception (carrier) testing is considered a contract exclusion in some member benefit certificates of coverage.
For members with benefit certificates without a contract exclusion, genetic testing for alpha- or beta- thalassemia meets member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in the following situations:
Does Not Meet Primary Coverage Criteria Or Is Investigational For Contracts Without Primary Coverage Criteria
Preconception (carrier) testing for alpha or beta thalassemia in prospective parents does not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes in any other situation.
For members with contracts without primary coverage criteria, preconception (carrier) testing for alpha or beta thalassemia in prospective parents is considered investigational in any other situation. Investigational services are specific contract exclusions in most member benefit certificates of coverage.
Genetic testing to confirm a diagnosis of alpha or beta thalassemia does not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes in any other situation.
For members with contracts without primary coverage criteria, genetic testing to confirm a diagnosis of alpha or beta thalassemia is considered investigational in any other situation. Investigational services are specific contract exclusions in most member benefit certificates of coverage.
Genetic testing of individuals with hemoglobin H disease (α-thalassemia intermedia) to determine prognosis does not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness.
For members with contracts without primary coverage criteria, genetic testing of individuals with hemoglobin H disease (α-thalassemia intermedia) to determine prognosis is considered investigational. Investigational services are specific contract exclusions in most member benefit certificates of coverage.
Genetic testing for alpha or beta thalassemia in other clinical situations (recognizing that prenatal testing is not addressed in this policy) does not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes.
For members with contracts without primary coverage criteria, genetic testing for alpha or beta thalassemia in other clinical situations (recognizing that prenatal testing is not addressed in this policy) is considered investigational. Investigational services are specific contract exclusions in most member benefit certificates of coverage.
Effective Prior to January 2024
Does Not Meet Primary Coverage Criteria Or Is Investigational For Contracts Without Primary Coverage Criteria
Genetic testing to confirm a diagnosis of alpha thalassemia does not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes.
For members with contracts without primary coverage criteria, genetic testing to confirm a diagnosis of alpha thalassemia is considered investigational. Investigational services are specific contract exclusions in most member benefit certificates of coverage.
Genetic testing for alpha thalassemia in other clinical situations (recognizing that prenatal testing is not addressed in this policy) does not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes.
For members with contracts without primary coverage criteria, genetic testing for alpha thalassemia in other clinical situations (recognizing that prenatal testing is not addressed in this policy) is considered investigational. Investigational services are specific contract exclusions in most member benefit certificates of coverage.
Preconception (carrier) testing for alpha thalassemia in prospective parents is considered a contract exclusion. Services for genetic testing to determine the likelihood of passing an inheritable disease or congenital abnormality to an offspring are not covered in most member benefit certificates of coverage.
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Rationale: |
The published literature on genetic testing for alpha thalassemia consists primarily of reports describing the molecular genetics of testing, the types of mutations encountered, and genotype-phenotype correlations.
Analytic validity
No published literature was identified on the analytic validity of genetic screening. Some information on the analytic validity of testing was identified from genetic laboratory testing sites. For example, one site reports that “rare” polymorphisms can cause false-negative or false-positive results on gene sequence analysis (Mayo Medical Laboratories, 2013).
Clinical Validity
No published literature was identified on the clinical validity of genetic screening. Clinical validity is expected to be high when the causative mutation is a large deletion of one or more alpha globin gene, as PCR testing is generally considered highly accurate for this purpose. When a point mutation is present, the clinical validity is less certain.
Clinical Utility
There are several potential areas for clinical utility. Genetic testing can be used to determine the genetic abnormalities underlying a clinical diagnosis of alpha thalassemia. It can also be used define the genetics of alpha globin genes in relatives of patients with a clinical diagnosis of alpha thalassemia. Preconception (carrier) testing can be performed to determine the likelihood of an offspring with an alpha thalassemia syndrome. Prenatal (in utero) testing can also be performed to determine the presence and type of alpha thalassemia of a fetus. Prenatal testing will not be addressed in this policy.
The diagnosis of alpha thalassemia can be made without use of genetic testing. This is first done by analysis of the complete blood count (CBC) and peripheral blood smear, in conjunction with testing for other forms of anemia. Patients with a CBC demonstrating microcytic, hypochromic red blood cell (RBC) indices who are not found to have iron deficiency, have a high likelihood of thalassemia. On peripheral blood smear, the presence of inclusion bodies and target cells is consistent with the diagnosis of alpha thalassemia.
Hemoglobin electrophoresis can distinguish between the asymptomatic carrier states and alpha thalassemia intermedia (HgH disease) by identifying the types and amounts of abnormal hemoglobin present. In the carrier states, >95% of the Hb molecules are normal (HbA) with a small minority of HgBA2 present(1-3%) (Galanello, 2011). Alpha thalassemia intermedia is diagnosed by finding a substantial portion of HgbH (1-30%) on electrophoresis (Galanello, 2011). In alpha thalassemia major, the majority of the Hgb is abnormal, in the form of Hgb Bart (85-90%) (Galanello, 2011).
However, biochemical testing cannot always reliably distinguish between the asymptomatic carrier state and alpha thalassemia trait. Genetic testing can differentiate between the asymptomatic carrier state (alpha thalassemia minima) and alpha thalassemia trait (alpha thalassemia minor) by elucidating the number of abnormal genes present. This distinction is not important clinically since both the carrier state and alpha thalassemia trait are asymptomatic conditions that do not require medical care. Since the diagnosis of clinically relevant alpha thalassemia conditions can be done without genetic testing, there is little utility to genetic testing of a patient with a clinical diagnosis of thalassemia to determine the underlying genetic abnormalities.
Prognostic Testing in Patients With alpha-Thalassemia
Among patients with hemoglobin H disease, there is heterogeneity in the nature of the mutation (ie, deletional vs nondeletional), with variations across geographic areas and ethnic groups (Fucharoen, 2009). Patients with deletional mutations may have a less severe course of illness than those with nondeletional mutations (Fucharoen, 2009). In a cohort of 147 Thai pediatric patients with HbH disease, those with nondeletional mutations were more likely to have pallor after fever, hepatomegaly, splenomegaly, jaundice, short stature, need for transfusions, and gallstones (Laosombat, 2009).
The evidence suggests that different genetic mutations leading to alpha-thalassemia are associated with differences in prognosis. New treatments for some of the complications of HbH disease that result from ineffective erythropoiesis and iron overload and may differ for different genotypes are under development (Laosombat, 2009). However, no evidence was identified to indicate that patient management or outcomes would be changed by prognostic testing.
Summary
Mutations in the alpha thalassemia gene are common in certain ethnic groups. A variety of alpha thalassemia syndromes can occur, with severity determined by the number of abnormal genes present in an individual. The diagnosis of alpha thalassemia can be made clinically, and the thalassemia syndromes that have clinical implications (HgBH disease, Hg Bart’s) can be diagnosed biochemically without the need for genetic testing.
For patients with hemoglobin H disease, there may be a genotype-phenotype correlation for disease severity, but there is not currently evidence to indicate that patient management or outcomes would be altered through genetic testing.
2015 Update
A literature search conducted through October 2015 did not reveal any new information that would prompt a change in the coverage statement.
2017 Update
A literature search using the MEDLINE database through October 2017 did not reveal any new literature that would prompt a change in the coverage statement. The key identified literature is summarized below.
One study assessing the analytic validity was identified. This 2016 study evaluated the reproducibility and accuracy of a PCR-based multicolor melting curve analysis method for detecting common nondeletional variants in the HBA2 gene from 700 whole blood samples (Huang, 2016). Reproducibility of the assay was high. In the clinical samples, there was 100% concordance between the 20 genotypes identified and the genotyping method. Petropoulou et al (2015) evaluated a PCR-based high-resolution melting curve analysis of duplicated areas of the HBA1 and HBA2 genes with novel non-deletion variants (Petropoulou, 2015). The study included 62 samples with previously identified novel variants and 18 normal controls; the melting curve analysis was able to distinguish at least 80% of novel homozygote samples detected by earlier generation tests.
Additionally, one study was identified assessing clinical validity. In 2016, Henderson et al reported on a retrospective study of genotype and phenotype correlations of the novel thalassemia and abnormal hemoglobin variants identified after adoption of routine DNA sequencing of α- and β-globin genes for all U.K. samples referred for evaluation of hemoglobinopathy for the preceding 10 years (Henderson, 2016). Of a total of approximately 12,000 samples, 15 novel α+-thal variants, 19 novel β-thal variants, and 11 novel β-globin variants were detected.
2018 Update
A literature search was conducted through November 2018. There was no new information identified that would prompt a change in the coverage statement. The key identified literature is summarized below.
American College of Obstetricians and Gynecologists
The American College of Obstetricians and Gynecologists published an opinion document in 2017 that includes multiple general recommendations about carrier screening of genetic conditions (ACOG, 2017). They are not summarized in this evidence review. Specific descriptions of genetic testing for α-thalassemia include the following: DNA-based genetic testing should be used to detect a-globin gene characteristics of suspected cases of thalassemia “if the mean corpuscular volume is below normal, iron deficiency anemia has been excluded, and the hemoglobin [Hb] electrophoresis is not consistent with b-thalassemia trait (ie, there is no elevation of Hb A2 or Hb F).”
2019 Update
Annual policy review completed with a literature search using the MEDLINE database through November 2019. No new literature was identified that would prompt a change in the coverage statement.
2020 Update
Annual policy review completed with a literature search using the MEDLINE database through November 2020. No new literature was identified that would prompt a change in the coverage statement. The key identified literature is summarized below.
A 2019 Chinese study of over 15,000 samples that utilized both next-generation sequencing and PCR reported similar numbers of alpha thalassemia (n=19) and beta thalassemia (N=21) variants (Zhang, 2019).
2021 Update
Annual policy review completed with a literature search using the MEDLINE database through November 2021. No new literature was identified that would prompt a change in the coverage statement.
2022 Update
Annual policy review completed with a literature search using the MEDLINE database through November 2022. No new literature was identified that would prompt a change in the coverage statement.
2023 Update
Annual policy review completed with a literature search using the MEDLINE database through November 2023. No new literature was identified that would prompt a change in the coverage statement. The key identified literature is summarized below.
There is an association between genotype and phenotype among patients with HbH disease. Individuals with a nondeletion variant typically have an earlier presentation, more severe anemia, jaundice, and bone changes, and more frequently require transfusions (Tamary, 2023).
A number of types of genetic abnormalities are associated with α-thalassemia. More than 100 genetic variants have been described. Deletion of 1 or more of the α-globin chains is the most common genetic defect. This type of genetic defect is found in approximately 90% of cases (Tamary, 2023). Large genetic rearrangements can also occur from defects in crossover and/or recombination of genetic material during reproduction. Single nucleotide variants in 1 or more of the α genes that impair transcription and/translation of the α-globin chains.
Testing is commercially available through several genetic labs. Targeted variant analysis for known α-globin gene variants can be performed by polymerase chain reaction (PCR) (Tamary, 2023). PCR can also be used to identify large deletions or duplications. Newer testing methods have been developed to facilitate identification of α-thalassemia variants, including chromosomal microarray analysis using oligonucleotide or SNP arrays, and next-generation sequencing (NGS) for analysis of deletion breakpoints.
Patients with deletional variants may have a less severe course of illness than those with nondeletional variants (Abolghasemi, 2022).
Unlike clinical diagnosis, for carrier testing, it is important to distinguish between α-thalassemia carrier (1 abnormal gene) and α-thalassemia trait (2 abnormal genes), and important to distinguish between the 2 variants of α-thalassemia trait, i.e., the αα/-- (cis variant) and the α-/α- (trans variant). This is important because only when both parents have the αα/-- cis variant is there a risk for a fetus with α-thalassemia major (Langlois, 2008). When both parents are α-thalassemia carriers (αα/--), there is a 1 in 4 likelihood that an offspring will have α-thalassemia major and hydrops fetalis. These parents may decide to pursue preimplantation genetic diagnosis in conjunction with in vitro fertilization to avoid a pregnancy with hydrops fetalis.
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CPT/HCPCS: | |
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References: |
Abolghasemi H, Kamfar S, Azarkeivan A, et al.(2022) . Clinical and genetic characteristics of hemoglobin H disease in Iran. Pediatr Hematol Oncol. Sep 2022; 39(6): 489-499. PMID 34951342 American College of Obstetricians and Gynecologists, Committee on Genetics.(2018) Committee Opinion Number 691: Carrier Screening for Genetic Conditions. https://www.acog.org/Clinical-Guidance-andPublications/Committee-Opinions/Committee-on-Genetics/Carrier-Screening-for-Genetic-Conditions. Accessed January 22, 2018. Fallah MS, Mahdian R, Aleyasin SA et al.(2010) Development of a quantitative real-time PCR assay for detection of unknown alpha-globin gene deletions. Blood Cells Mol Dis 2010; 45(1):58-64. Foglietta E, Bianco I, Maggio A et al.(2003) Rapid detection of six common Mediterranean and three non-Mediterranean alpha-thalassemia point mutations by reverse dot blot analysis. Am J Hematol 2003; 74(3):191-5. Fucharoen S, Viprakasit V.(2009) Hb H disease: clinical course and disease modifiers. ASH Education Program Book. January 1, 2009 2009;2009(1):26-34. PMID Galanello R, Cao A.(2011) Gene test review. Alpha-thalassemia. Genet Med 2011; 13(2):83-8. Grimholt RM, Urdal P, Klingenberg O, et al.(2014) Rapid and reliable detection of -globin copy number variations by quantitative real-time PCR. BMC Hematol. Jan 24 2014; 14(1): 4. PMID 24456650 Hellani A, Fadel E, El-Sadadi S et al.(2009) Molecular spectrum of alpha-thalassemia mutations in microcytic hypochromic anemia patients from Saudi Arabia. Genet Test Mol Biomarkers 2009; 13(2):219-21. Henderson SJ, Timbs AT, McCarthy J, et al.(2016) Ten years of routine alpha- and beta-globin gene sequencing in UK hemoglobinopathy referrals reveals 60 novel mutations. Hemoglobin. 2016;40(2):75-84. PMID 26635043. Huang Q, Wang X, Tang N, et al.(2016) Rapid detection of non-deletional mutations causing alpha-thalassemia by multicolor melting curve analysis. Clin Chem Lab Med. Mar 2016;54(3):397-402. PMID 26351923. Joly P, Pegourie B, Courby S et al.(2008) Two new alpha-thalassemia point mutations that are undetectable by biochemical techniques. Hemoglobin 2008; 32(4):411-7. Lacerra G, Musollino G, Di Noce F et al.(2007) Genotyping for known Mediterranean alpha-thalassemia point mutations using a multiplex amplification refractory mutation system. Haematologica 2007; 92(2):254-5. Langlois S, Ford JC, Chitayat D, et al.(2008) Carrier screening for thalassemia and hemoglobinopathies in Canada. J Obstet Gynaecol Can. Oct 2008; 30(10): 950-959. PMID 19038079 Laosombat V, Viprakasit V, Chotsampancharoen T, et al.(2009) Clinical features and molecular analysis in Thai patients with HbH disease. Ann Hematol. Dec 2009;88(12):1185-1192. PMID 19390853 Mayo Medical Laboratories.(2013) Alpha-globin gene analysis. 2013. Available online at: http://www.mayomedicallaboratories.com/test-catalog/Overview/9499. Last accessed July 2013. Muncie HL, Jr., Campbell J.(2009) Alpha and beta thalassemia. Am Fam Physician 2009; 80(4):339-44. Musallam KM, Rivella S, Vichinsky E, et al.(2013) Non-transfusion-dependent thalassemias. Haematologica. Jun 2013;98(6):833-844. PMID 23729725 Origa R, Moi P.(2016) Alpha-Thalassemia. In: Adam MP, Ardinger HH, Pagon RA, et al., eds. GeneReviews. Seattle, WA: University of Washington; 2016. Petropoulou M, Poula A, Traeger-Synodinos J, et al.(2015) Screening non-deletion alpha-thalassaemia mutations in the HBA1 and HBA2 genes by high-resolution melting analysis. Clin Chem Lab Med. Nov 2015;53(12):1951-1959. PMID 26035111. Qadah T, Finlayson J, Newbound C et al.(2012) Molecular and cellular characterization of a new alpha-thalassemia mutation (HBA2:c.94A>C) generating an alternative splice site and a premature stop codon. Hemoglobin 2012; 36(3):244-52. Shalmon L, Kirschmann C, Zaizov R.(1996) Alpha-thalassemia genes in Israel: deletional and nondeletional mutations in patients of various origins. Hum Hered 1996; 46(1):15-9. Tamary H, Dgany O.(2023) Alpha-Thalassemia. In: Adam MP, Mirzaa GM, Pagon RA, et al., eds. GeneReviews. Seattle, WA: University of Washington; 1993-2023. Vichinsky E.(2010) Complexity of alpha thalassemia: growing health problem with new approaches to screening, diagnosis, and therapy. Ann N Y Acad Sci 2010; 1202:180-7. Zhang H, Li C, Li J, et al.(2019) Next-generation sequencing improves molecular epidemiological characterization of thalassemia in Chenzhou Region, P.R. China. J Clin Lab Anal. May 2019; 33(4): e22845. PMID 30809867 |
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Group specific policy will supersede this policy when applicable. This policy does not apply to the Wal-Mart Associates Group Health Plan participants or to the Tyson Group Health Plan participants.
CPT Codes Copyright © 2024 American Medical Association. |