Coverage Policy Manual
Policy #: 2023031
Category: Laboratory
Initiated: June 2023
Last Review: November 2024
  Laboratory Testing Investigational Services

Description:
There are numerous commercially available genetic and molecular diagnostic, prognostic, and therapeutic tests for individuals with certain diseases or asymptomatic individuals with future risk. This review relates to genetic and molecular diagnostic tests not addressed in a separate review. If a separate evidence review exists, then conclusions reached there supersede conclusions here. The main criterion for inclusion in this review is the limited evidence on the clinical utility for the test. As these tests do not have clinical utility, the evidence is insufficient to determine that the technology results in an improvement in the net health outcome.
 
This policy addresses laboratory services considered to be investigational. These tests are often available on a clinical basis before the required and necessary evidence base to support clinical validity and utility is established. Because these tests are often proprietary, there may be no independent test evaluation data available in the early stages to support the laboratory's claims regarding test performance and utility. While studies using these tests may generate information that may help elucidate the biologic mechanisms of disease and eventually help design treatments, the tests listed in this policy are currently in a developmental phase, with limited evidence of clinical utility for diagnosis, prognosis, or risk assessment.
 
Regulatory Status
Clinical laboratories may develop and validate tests in-house and market them as a laboratory service; laboratory-developed tests must meet the general regulatory standards of the Clinical Laboratory Improvement Amendments. Laboratories that offer laboratory-developed tests must be licensed by the Clinical Laboratory Improvement Amendments for high-complexity testing. To date, the U.S. Food and Drug Administration has chosen not to require any regulatory review of this test.

Policy/
Coverage:
Effective September 2023, coverage policies 2015008 (Genetic Test: Miscellaneous Genetic and Molecular Diagnostic Tests), 2016019 (Short Tandem Repeat Analysis for Specimen Provenance Testing [know error® system]), and 2023031 ( Laboratory Testing Investigational Services) were combined into one policy (2023031). Policies 2015008 and 2016019 are now archived.
 
Effective November 2023
 
Does Not Meet Primary Coverage Criteria Or Is Investigational For Contracts Without Primary Coverage Criteria
 
All tests listed in this policy do not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes.
 
For members with contracts without primary coverage criteria, all tests listed in this policy are considered investigational. Investigational services are considered specific contract exclusions in most member benefit certificates of coverage.
 
    • AMBLor melanoma prognostic test (Avero Diagnostics) 0387U
    • Apolipoprotein L1 (APOL 1) Renal Risk Variant Genotyping (Quest Diagnostics) 0355U
    • ArteraAI Prostate Test (Artera Inc.) 0376U
    • Avantect Pancreatic Cancer Test (ClearNote Health) 0410U
    • BeScreened™-CRC test
    • BTG Early Detection of Pancreatic Cancer (Breakthrough Genomics, Inc.) 0405U
    • CARDIO inCode-SCORE (CiC SCORE) (GenIn Code.) 0401U
    • Celiac Plus, Celiac Genetics and Celiac Serology
    • ColonSentry
    • ColoScape™ Colorectal Cancer Detection Test (DiaCarta Clinical Lab) 0368U
    • Courtagen Spotlight Panels (any spotlight panel unless the indication is specifically addressed in separate policy)
    • Crohn’s Prognostic
    • CyPath® Lung (Precision Pathology Services) 0406U
    • DecisionDx-Melanoma
    • DecisionDx-Thymoma
    • DNA Methylation Pathway Profile (Mosaic Diagnostics (formerly Great Plains Laboratory))
    • Esopredict™ (formerly Envisage) (Previse (formerly Capsulomics, Inc.)) 0386U
    • FRAT® (Folate Receptor Antibody Test) (Religen Inc.) 0399U
    • GI Effects® (Stool)
    • IBD sgi Diagnostic™
    • ImmunoGenomic Profile
    • KawasakiDx™ (formerly PEPredictDx) (mProbe, Inc. (formerly OncoOmicsDx Laboratory)) 0390U
    • know error® (Strand Dxcs) (Genetic testing to confirm the identity of a biopsy specimen using short tandem repeat-based methodology)
    • MicroGenDx (MicroGen Diagnostics) 0112U
    • Moleculera Cunningham Panel
    • NaviDKD® Predictive Diagnostic Screening for KidneyHealth (Journey Biosciences, Inc.) 0384U
    • OncoExTra test (Precision Oncology, Exact Sciences) 0329U
    • OncoTarget/OncoTreat 0019U
    • Oncuria Detect (DiaCarta Clinical Lab) 0365U
    • Oncuria Monitor (DiaCarta Clinical Lab) 0366U
    • Oncuria Predict (DiaCarta Clinical Lab) 0367U
    • PanGIA Prostate
    • PersonalisedRX (Lab Genomics LLC, Agena Bioscience, Inc.) 0380U – See coverage policies 2005003 and 2013046
    • PFAS Testing and PFASure TM (National Medical Services-NMS Labs) 0394U
    • Polygenic Risk Score
    • PromarkerD Diabetic Kidney Disease Risk Assessment (Sonic Reference Laboratory, Proteomics International) 0385U
    • Prometheus Monitr Crohn’s Disease
    • Prometheus® Celiac PLUS (Prometheus Laboratories)
    • Prometheus® Crohn's Prognostic (Prometheus Laboratories)
    • Prometheus® IBD sgi Diagnostic® (Prometheus Laboratories)
    • Qlear UTI - Reflex ABR (LifeScan Labs of Illinois, Thermo Fisher Scientific) 0372U
    • Qlear UTI (LifeScan Labs of Illinois, Thermo Fisher Scientific) 0371U
    • Respiratory Pathogen with ABR (RPX) (Lab Genomics LLC, Thermo Fisher Scientific) 0373U
    • ResponseDX Colon
    • RFC1 Repeat Expansion Test (University of Chicago Genetic Services Laboratories) 0377U – See coverage policy 2013041
    • SEPT9 methylated DNA, Colovantage, Epi proColon
    • SmartVascular Dx (SmartHealth DX) 0415U
    • SYN-ONE tissue (nerve fiber) testing (CND Life Sciences) effective Feb 2024
    • SYNTap Biomarker Test (Amprion Clinical Laboratory) 0393U
    • Thyroid GuidePx® (Protean Biodiagnostics) 0362U – See coverage policy 2012003
    • TissueCypher 0108U
    • TransPredict Fc gamma 3A
    • Urogenital Pathogen with Rx Panel (UPX) (Lab Genomics LLC, Thermo Fisher Scientific) 0374U
 
Gastroenterology (irritable bowel syndrome [IBS]), immunoassay for anti-CdtB and anti-vinculin antibodies does not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes.
 
For members with contracts without primary coverage criteria, gastroenterology (irritable bowel syndrome [IBS]), immunoassay for anti-CdtB and anti-vinculin antibodies is considered investigational. Investigational services are specific contract exclusions in most member benefit certificates of coverage.
 
Genetic Testing for CCND1/IGH (t(11;14)) translocation analysis does not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes.
 
For members with contracts without primary coverage criteria, genetic testing for CCND1/IGH (t(11;14)) translocation analysis is considered investigational. Investigational services are specific contract exclusions in most member benefit certificates of coverage.
 
Gene expression profiling for cutaneous melanoma (81529) by real time RT PCR does not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes.
 
For members with contracts without primary coverage criteria, gene expression profiling for cutaneous melanoma (81529) by real time RT PCR is considered investigational. Investigational services are specific contract exclusions in most member benefit certificates of coverage.
 
Effective September 2023 through October 2023
 
Does Not Meet Primary Coverage Criteria Or Is Investigational For Contracts Without Primary Coverage Criteria
 
All tests listed in this policy do not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes.
 
For members with contracts without primary coverage criteria, all tests listed in this policy are considered investigational. Investigational services are considered specific contract exclusions in most member benefit certificates of coverage.
 
    • AMBLor melanoma prognostic test (Avero Diagnostics) 0387U
    • Apolipoprotein L1 (APOL 1) Renal Risk Variant Genotyping (Quest Diagnostics) 0355U
    • BeScreened™-CRC test
    • CARDIO inCode-SCORE (CiC SCORE) (GenIn Code.) 0401U
    • Celiac Plus, Celiac Genetics and Celiac Serology
    • ColonSentry
    • Courtagen Spotlight Panels (any spotlight panel unless the indication is specifically addressed in separate policy)
    • Crohn’s Prognostic
    • DecisionDx-Melanoma
    • DecisionDx-Thymoma
    • DNA Methylation Pathway Profile
    • FRAT® (Folate Receptor Antibody Test) (Religen Inc.) 0399U
    • GI Effects® (Stool)
    • IBD sgi Diagnostic™
    • ImmunoGenomic Profile
    • KawasakiDx (OncoOmicsDx Laboratory) 0389U
    • know error® (Strand Dxcs) (Genetic testing to confirm the identity of a biopsy specimen using short tandem repeat-based methodology)
    • MicroGenDx (MicroGen Diagnostics) 0112U
    • Moleculera Cunningham Panel
    • OncoTarget/OncoTreat
    • OncoExTra test (Precision Oncology, Exact Sciences) 0329U
    • Oncuria Detect (DiaCarta Clinical Lab) 0365U
    • Oncuria Monitor (DiaCarta Clinical Lab) 0366U
    • Oncuria Predict (DiaCarta Clinical Lab) 0367U
    • PanGIA Prostate
    • PFAS Testing and PFASure TM (National Medical Services-NMS Labs) 0394U
    • Polygenic Risk Score
    • Prometheus IBcause Diagnostic Test
    • Prometheus Monitr Crohn’s Disease
    • ResponseDX Colon
    • SEPT9 methylated DNA, Colovantage, Epi proColon
    • SYNTap Biomarker Test (Amprion Clinical Laboratory) 0393U
    • TransPredict Fc gamma 3A
 
Gastroenterology (irritable bowel syndrome [IBS]), immunoassay for anti-CdtB and anti-vinculin antibodies does not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes.
 
For members with contracts without primary coverage criteria, gastroenterology (irritable bowel syndrome [IBS]), immunoassay for anti-CdtB and anti-vinculin antibodies is considered investigational. Investigational services are specific contract exclusions in most member benefit certificates of coverage.
 
Genetic Testing for CCND1/IGH (t(11;14)) translocation analysis does not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes.
 
For members with contracts without primary coverage criteria, genetic testing for CCND1/IGH (t(11;14)) translocation analysis is considered investigational. Investigational services are specific contract exclusions in most member benefit certificates of coverage.
 
Gene expression profiling for cutaneous melanoma (81529) by real time RT PCR does not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes.
 
For members with contracts without primary coverage criteria, gene expression profiling for cutaneous melanoma (81529) by real time RT PCR is considered investigational. Investigational services are specific contract exclusions in most member benefit certificates of coverage.
 
Effective June 2023 – August 2023
 
Does Not Meet Primary Coverage Criteria Or Is Investigational For Contracts Without Primary Coverage Criteria
 
All tests listed in this policy do not meet member benefit certificate primary coverage criteria that there be scientific evidence of effectiveness in improving health outcomes.
 
For members with contracts without primary coverage criteria, all tests listed in this policy are considered investigational.  Investigational services are considered specific contract exclusions in most member benefit certificates of coverage.
 
    • AMBLor melanoma prognostic test (Avero Diagnostics) 0387U
    • Apolipoprotein L1 (APOL 1) Renal Risk Variant Genotyping (Quest Diagnostics) 0355U
    • CARDIO inCode-SCORE (CiC SCORE) (GenIn Code.) 0401U
    • FRAT® (Folate Receptor Antibody Test) (Religen Inc.) 0399U
    • KawasakiDx (OncoOmicsDx Laboratory) 0389U
    • MicroGenDx (MicroGen Diagnostics) 0112U
    • OncoExTra test (Precision Oncology, Exact Sciences) 0329U
    • Oncuria Detect (DiaCarta Clinical Lab) 0365U
    • Oncuria Monitor (DiaCarta Clinical Lab) 0366U
    • Oncuria Predict (DiaCarta Clinical Lab) 0367U
    • PFAS Testing and PFASure TM (National Medical Services-NMS Labs) 0394U
    • Polygenic Risk Score
    • SYNTap Biomarker Test (Amprion Clinical Laboratory) 0393U

Rationale:
This review was created in June 2023 with a search of the PubMed database. The most recent literature update was performed through June 1, 2023.
 
Evidence reviews assess whether a medical test is clinically useful. A useful test provides information to make a clinical management decision that improves the net health outcome. That is, the balance of benefits and harms is better when the test is used to manage the condition than when another test or no test is used to manage the condition.
 
The first step in assessing a medical test is to formulate the clinical context and purpose of the test. The test must be technically reliable, clinically valid, and clinically useful for that purpose. Evidence reviews assess the evidence on whether a test is clinically valid and clinically useful. Technical reliability is outside the scope of these reviews, and credible information on technical reliability is available from other sources.
 
Promotion of greater diversity and inclusion in clinical research of historically marginalized groups (e.g., People of Color [African-American, Asian, Black, Latino and Native American]; LGBTQIA (Lesbian, Gay, Bisexual, Transgender, Queer, Intersex, Asexual); Women; and People with Disabilities [Physical and Invisible]) allows policy populations to be more reflective of and findings more applicable to our diverse members. While we also strive to use inclusive language related to these groups in our policies, use of gender-specific nouns (e.g., women, men, sisters, etc.) will continue when reflective of language used in publications describing study populations.
 
Diagnostic Testing
 
Multiple Conditions
Single nucleotide variants (SNVs) are the most common type of genetic variation, and each SNV represents a difference in a single nucleotide in the DNA sequence. Most commonly, SNVs are found in the DNA between genes and can act as biologic markers of genes and disease association. When SNVs occur within a gene or a gene regulatory region, they can play a more direct role in disease by affecting the gene's function. Single nucleotide variants may predict an individual's response to certain drugs, susceptibility to environmental factors, and the risk of developing certain diseases.
 
DNA specimen provenance assays can be used to confirm that tissue specimens are correctly matched to the patient of origin. Specimen provenance errors may occur in up to 1% to 2% of pathology tissue specimens and have serious negative implications for patient care if the error is not corrected (Pfeifer, 2011; Beauvais, 2013). Analysis of DNA microsatellites from tissue specimens can be performed by analyzing long tandem repeats (LTR) and comparing the LTRs of the tissue specimen with LTRs from a patient sample.
 
The DNA Methylation Pathway Profile (Mosaic Diagnostics) analyzes SNVs associated with certain biochemical processes, including methionine metabolism, detoxification, hormone imbalances, and vitamin D function. Intended uses for the test include clarification of a diagnosis suggested by other testing and as an indication for supplements and diet modifications.
 
No full-length, peer-reviewed studies of the DNA Methylation Pathway Profile were identified.
 
The know error system (Strand Diagnostics) compares the LTRs of tissue samples with LTRs from a buccal swab of the patient. The intended use of the test is to confirm tissue of origin and avoid specimen provenance errors due to switching of patient samples, mislabeling, or sample contamination.
 
Evidence for the clinical validity of the know error Specimen Provenance Assay is lacking. There is some evidence on the application of short tandem repeat testing for specimen provenance assays in general, but these data are not specific to the know error test (Pfeifer, 2012).
 
There is a lack of published evidence on the use of the know error test to confirm the tissue of origin. Studies are needed that compare the use of know error with standard laboratory quality measures and that demonstrate a reduction in specimen provenance errors associated with the use of know error.
 
Celiac Disease
Previously called sprue, celiac sprue, gluten-sensitive enteropathy, gluten intolerance, nontropical sprue, or idiopathic steatorrhea, celiac disease is an immune-based reaction to gluten (water-insoluble proteins in wheat, barley, rye) that primarily affects the small intestine. Celiac disease occurs almost exclusively in patients who carry at least 1 human leukocyte antigen DQ2 or DQ8; the negative predictive value of having neither allele exceeds 98% (Pallav, 2014). Serum antibodies to tissue transglutaminase, endomysium, and deamidated gliadin peptide support a diagnosis of celiac disease, but diagnostic confirmation requires duodenal biopsy taken when patients are on a gluten-containing diet (Ludvigsson, 2013).
 
Celiac PLUS (Prometheus Laboratories) is a panel of 2 genetic and 5 serologic markers associated with celiac disease. Per the manufacturer, Celiac PLUS is a diagnostic test that also stratifies the future risk of celiac disease (Prometheus Laboratories, 2023). Genetic markers (human leukocyte antigen DQ2 and DQ8) are considered predictive of the risk of developing celiac disease; serologic markers(immunoglobulin A [IgA] anti-tissue transglutaminase antibody, IgA anti-endomysial antibodies, IgA anti-deamidated gliadin peptide antibodies, IgG anti-deamidated gliadin peptide, and total IgA) are considered diagnostic for celiac disease (Pietzak, 2009). Celiac PLUS is intended for patients at risk for the disease (e.g., with an affected first-degree relative) or with symptoms suggestive of the disease.
 
Celiac PLUS tests for genetic and serologic factors known to be associated with celiac disease. All 7 test components are included in an evidence-based diagnostic algorithm developed by the American College of Gastroenterology (Rubio-Tapia, 2013). However, algorithmic testing is individualized according to the baseline risk of disease and is done sequentially, rather than simultaneously as in Celiac PLUS.
 
No studies of the combined serologic and genetic Celiac PLUS test were identified. Information about clinical validity of obtaining several serologic and genetic tests at once (i.e., Celiac PLUS) is lacking; improved sensitivity and reduced specificity may be expected.
 
No studies examining the clinical validity or clinical utility of Celiac PLUS were identified. Factors that support a chain of evidence for prognostic or diagnostic utility are lacking.
 
Irritable Bowel Syndrome
Irritable bowel syndrome (IBS) is a functional gastrointestinal (GI) disorder that affects 10% to 20% of the general population in the U.S. and worldwide. Symptoms include abdominal pain and/or bloating associated with disordered bowel habit (constipation, diarrhea, or both). Pathophysiology is poorly understood but may be related to chronic low-grade mucosal inflammation and disturbances in GI flora (Ford, 2014). Recommended treatments include dietary restriction and pharmacologic symptom control (NICE, 2017; McKenzie, 2012; Weinberg, 2014). As living microorganisms that promote health when administered to a host in therapeutic doses, probiotics are being investigated as a treatment for IBS (Hill, 2014). Several systematic reviews of randomized controlled trials (RCTs) have found evidence to support efficacy, but results from recent RCTs have been mixed (Ford, 2014; Trinkley, 2011; Hungin, 2013; Ortiz-Lucas, 2013; Whelan, 2011; Stevenson, 2014; Shavakhi, 2014; Ludidi, 2014; Rogha, 2014; Urgesi, 2014; Sisson, 2014). This discrepancy may be due in part to the differential effects of different probiotic strains and doses.
 
The GI Effects Comprehensive Stool Profile (Genova Diagnostics) is a multianalyte stool assay (Genova Diagnostics, 2023). The test uses polymerase chain reaction (PCR) to quantify 26 commensal gut bacteria and standard biochemical and culture methods to measure levels of other stool components (e.g., lipids, fecal occult blood) and potential pathogens (ova and parasites, opportunistic bacteria, yeast). The test is purported to optimize management of gut health and to differentiate IBS from inflammatory bowel disease (IBD).
 
No studies were identified that assessed the accuracy of the GI Effects fecal panel for diagnosing IBS or for documenting "gut health," a concept that may be difficult to define given large interindividual variability in gut flora (Hanaway, 2006).
 
Evidence for the clinical validity and utility of the GI Effects Comprehensive Stool Profile is lacking. Because probiotics are not currently a standard treatment of IBS, the impact of test results on disease management is uncertain; i.e., a chain of evidence for clinical utility of the test cannot be established.
 
Inflammatory Bowel Disease
Inflammatory bowel disease is an autoimmune condition characterized by inflammation of the bowel wall and has clinical symptoms of abdominal pain, diarrhea, and associated symptoms. Crohn disease (CD) and ulcerative colitis are the 2 main entities under the category of IBD. The diagnosis is typically made by endoscopy or colonoscopy with biopsy and histologic analysis. This requires a semi-invasive procedure; as a result, a blood test to diagnose IBD could avoid the need for the procedures.
 
IBD sgi Diagnostic (Prometheus Laboratories) is a panel of 17 serologic (n=8), genetic (n=4), and inflammatory (n=5) biomarkers. A proprietary algorithm produces an IBD score; results are reported as consistent with IBD (consistent with ulcerative colitis, consistent with CD, or inconclusive for ulcerative colitisvs. CD) or not consistent with IBD. The test is intended for use in patients with clinical suspicion of IBD.
 
The IBD sgi Diagnostic product monograph includes an extensive bibliography that documents associations of the 18 component markers, individually and in combination, with ulcerative colitis and/or Crohn disease (CD) (Prometheus Laboratories, 2023).
 
In a review of the monograph, Shirts et al observed that serologic tests for ASCA-IgA, ASCA-IgG, and atypical perinuclear anti-neutrophil cytoplasmic antibody are standard of care in the diagnostic workup of IBD, although not all investigators include these tests in recommended diagnostic strategies (Shirts, 2012; Conrad, 2014; Laass, 2014; Ordas, 2012; Kornbluth, 2010; Baumgart, 2012; Lichtenstein, 2009). These 3 markers are included in the 18-marker panel. Based on a 2006 meta-analysis of 60 studies (N=11,608), Reese et al (2006) reported that pooled sensitivity and specificity of the 3-test panel were 63% and 93%, respectively, for diagnosing IBD (Reese, 2006). Because the product monograph did not compare the 18-marker panel with the 3-marker panel, incremental improvement in diagnosis with the 18-marker panel is unknown. Shirts et al calculated an area under the curve for the 3-marker panel of 0.899.
 
Published evidence supports associations of each marker in the 18-marker panel, alone and in combination, with IBD diagnosis. Based on manufacturer data, the accuracy for IBD diagnosis of the 18-marker panel exceeds that of each component marker, but the relevant comparison with a panel of 3 markers that has good discrimination for IBD was not included; subsequent analysis has suggested that the panels may perform similarly. Performance characteristics for the 18-marker panel to distinguish ulcerative colitis from CD were not provided.
 
No studies examining the clinical utility of IBD sgi Diagnostic were identified. Although manufacturer data supported the clinical validity of the test for diagnosing IBD, this evidence is insufficient to support a chain of evidence for clinical utility. For distinguishing ulcerative colitis from CD, clinical validity has not been established; therefore, a chain of evidence for clinical utility for this purpose cannot be established.
 
Prognostic Testing
 
Crohn Disease
Recent studies have identified serologic and genetic correlates of aggressive CD that is characterized by fistula formation, fibro stenosis, and the need for surgical intervention (Targan, 2005; Ippoliti, 2010; Abreu, 2002). Prometheus has developed a blood test that aims to identify patients with CD who are likely to experience an aggressive disease course.
 
Crohn's Prognostic (Prometheus Laboratories) is a panel of 6 serologic (n=3) and genetic (n=3) biomarkers. Limited information about the test is available on the manufacturer's website.
 
No studies of the 6-marker Crohn's Prognostic test were identified.
 
Direct and indirect evidence for clinical utility of the Crohn's Prognostic test to identify individuals likely to have an aggressive disease course are currently lacking.
 
Laboratory Testing Investigational Services
 
Clinical Context and Test Purpose
The purpose of various commercially available genetic and molecular diagnostic, prognostic, and therapeutic tests in patients relevant indications is to inform a clinical management decision that improves the net health outcome.
 
No formal evidence review was conducted. To sufficiently evaluate clinical utility, the following PICO characteristics must be well-defined.
 
Populations
The relevant population of interest are individuals with various indications for diagnostic, prognostic, therapeutic, or future risk assessment testing.
 
To sufficiently evaluate clinical utility, the intended use population should be clearly defined, including disease state, stage or severity, prior treatment, and symptomatic status. For genetic diseases, details regarding inheritance and penetrance provide valuable context.
 
Interventions
This review addresses the following tests:
 
Polygenic risk scores: These tests may estimate an individual's genetic risk of a certain disease and are calculated by adding the number of genetic risk variants, weighted by their effect size. These scores can be combined with physical and social environment risk factors for better risk stratification.
 
MicroGenDx (MicroGen Diagnostics): This test uses quantitative polymerase chain reaction and next-generation sequencing (NGS) to diagnose various infections. Proposed uses include the evaluation of culture-negative infections, evaluation of patients not responding to current treatments, or in cases where other causes have been ruled out (MicroGen Diagnostics, 2023).
 
Apolipoprotein L1 (APOL1) Renal Risk Variant Genotyping (Quest Diagnostics): This test utilizes bi-directional Sanger sequencing analysis to detect genetic variants in the APOL1 gene associated with increased risk for renal disease. APOL1 testing may be applied in the kidney transplant setting to predict long-term renal outcomes for donors and recipients (Quest Diagnostics, 2023).
 
Thyroid GuidePx (Protean Biodiagnostics): This test utilizes NGS to provide a molecular sub-classification of papillary thyroid cancer with prognostic risk assessment. Patient stratification into low, intermediate, and high-risk groups may influence the clinical management of papillary thyroid cancer, particularly in the identification of individuals with a very low risk of recurrence to guide more conservative treatment (Protean Biodiagnostics, 2023).
 
To sufficiently evaluate clinical utility, the characteristics of the test should be well-defined including thresholds, cutoffs, or classifications used for categorization. The intended use of the test should be clearly stated, including its position in the clinical pathway. Use of the test to replace an existing test or testing pathway (replacement), use before an existing test or testing pathway (triage), or use after an existing test or testing pathway (add-on) should be clearly specified.
 
Comparators
The clinical practice alternative to which the test is being compared should be clearly stated, including any applicable reference standards and any known disadvantages of the comparator that the test under evaluation aims to overcome.
 
Outcomes
The general outcomes of interest are symptoms, quality of life, medication use, change in disease status, and morbidity and mortality. Follow-up duration may be informed by the natural history of the disease.
 
Health outcomes measure length of life, quality of life, and the ability to function and occur as a consequence of the interventions taken as a result of the test. Clinical management decisions and physiologic measures that are not validated surrogates are not health outcomes. The beneficial outcomes resulting from a true test result and the harmful outcomes resulting from a false test result should be clearly stated. Clinical management recommendations for a test result that is discordant with another test applied in the clinical pathway should also be defined.
 
Clinically Useful
A test is clinically useful if the use of the results informs management decisions that improve the net health outcome of care. The net health outcome can be improved if patients receive correct therapy, or more effective therapy, or avoid unnecessary therapy, or avoid unnecessary testing.
 
The studies using the tests listed in this policy are currently in a developmental phase, with limited evidence of clinical utility for diagnosis, prognosis, or risk assessment. The lack of demonstrated clinical utility of these tests is based on the following factors: (1) there is no or extremely limited published data addressing the test; and/or (2) it is unclear where in the clinical pathway the test fits (replacement, triage, add-on); and/or (3) it is unclear how the test leads to changes in management that would improve health outcomes and/or avoiding existing burdensome and invasive testing; and/or (4) thresholds for decision making have not been established; (5) and/or the outcome from the test result does not change in a way we find value in, relative to the outcomes(s) obtained without the test.
 
With the clinical utility not established, evidence review of clinical validity was not performed.
 
Direct Evidence
Direct evidence of clinical utility is provided by studies that have compared health outcomes for patients managed with and without the test. Because these are intervention studies, the preferred evidence would be from randomized controlled trials.
 
Chain of Evidence
Indirect evidence on clinical utility rests on clinical validity. If the evidence is insufficient to demonstrate test performance, no inferences can be made about clinical utility.
 
Supplemental Information
The purpose of the following information is to provide reference material. Inclusion does not imply endorsement or alignment with the evidence review conclusions.
 
Practice Guidelines and Position Statements
Guidelines or position statements will be considered for inclusion in 'Supplemental Information' if they were issued by, or jointly by, a US professional society, an international society with US representation, or National Institute for Health and Care Excellence (NICE). Priority will be given to guidelines that are informed by a systematic review, include strength of evidence ratings, and include a description of management of conflict of interest.
 
American Urological Association et al
In 2019, the American Urological Association (AUA) published joint guidelines with the Canadian Urological Association (CUA) and the Society of Urodynamics, Female Pelvic Medicine & Urogenital Reconstruction (SUFU) on the management of recurrent uncomplicated urinary tract infections in women (Anger, 2019). Regarding the use of polymerase chain reaction (PCR) and next-generation sequencing (NGS) techniques for the identification of bacterial species, the guideline states that "more evidence is needed before these technologies become incorporated into the guideline, as there is concern that adoption of this technology in the evaluation of lower urinary tract symptoms may lead to over treatment with antibiotics."
 
In 2016, the AUA published joint guidelines with the Society of Urologic Oncology on the diagnosis and treatment of non-muscle invasive bladder cancer (Chang, 2016). For use of urinary biomarkers after diagnosis, the guidelines state: "a clinician should not use urinary biomarkers in place of cystoscopic evaluation" (Strong Recommendation; Evidence Strength: Grade B); that "in a patient with a history of low-risk cancer and a normal cystoscopy, a clinician should not routinely use a urinary biomarker or cytology during surveillance (Expert Opinion); and that "in a patient with NMIBC, a clinician may use biomarkers to assess response to intravesical BCG (UroVysion FISH) and adjudicate equivocal cytology (UroVysion FISH and ImmunoCyt) (Expert Opinion)."
 
National Comprehensive Cancer Network
NCCN-Bladder Cancer v.3.2023 states urine biomarkers may be considered during surveillance of high-risk non-muscle invasive bladder cancer; yet, due to unclear clinical utility states that such is a 2B recommendation (NCCN, 2023).
 
The NCCN (v.2.2023) guidelines for colon cancer state that it has "not been established if molecular markers are useful in treatment determination (predictive markers) and prognosis" (NCCN, 2023).
 
National Human Genome Research Institute et al
In 2021, the National Human Genome Research Institute's ClinGen Complex Disease Working Group updated the Genetic Risk Prediction (GRIPS) Reporting Statement in collaboration with the Polygenic Score (PGS) Catalog (Wand, 2021).
 
American College of Gastroenterology
Celiac Disease
In 2023, the American College of Gastroenterology published a clinical practice update for the diagnosis and management of celiac disease (Singh, 2023). A recommendation for genetic testing using a multigene panel test (e.g., Celiac PLUS) was not included.
 
Inflammatory Bowel Disease
In 2018, the American College of Gastroenterology practice guidelines on Crohn disease state that genetic and routine serologic testing is not indicated to establish the diagnosis of Crohn's disease (Lichtenstein, 2018).
 
Ongoing and Unpublished Clinical Trials
Some currently unpublished trials that might influence this review are listed below.
 
NCT05276466a Assessment of Urinary Polymerase Chain Reaction (PCR) and Next Generation Sequencing (NGS) Technology in the Evaluation and Management of Females With Chronic Bladder Pain and Cystitis-like Symptoms Planned Enrollment: 100 Completion Date: Dec 2023
 
NCT05287438a Next Generation Sequencing Versus Traditional Cultures for Clinically Infected Penile Implants: Impact of Culture Identification on Outcomes Planned Enrollment: 40 Completion Date: Oct 2024
 
2024 Update
Annual policy review completed with a literature search using the MEDLINE database through May 2024. No new literature was identified that would prompt a change in the coverage statement.
 
Additional 2024 Update
Annual policy review completed with a literature search using the MEDLINE database through October 2024. No new literature was identified that would prompt a change in the coverage statement. The key identified literature is summarized below.
 
NCCN clinical practice guidelines on prostate cancer (v.4.2024) state that "there are advanced risk stratification tools (i.e., gene expression biomarkers, AI digital pathology) that have been variably demonstrated to independently improve risk stratification beyond NCCN or CAPRA risk stratification" and that "these tools are recommended to be used when they have the potential ability to change disease management. These tools should not be ordered reflexively. The most common treatment decisions in localized prostate cancer to use these tests include the use and/or intensity of active surveillance versus radical therapy, [radiotherapy](RT) versus RT + short-term (ST)-[androgen deprivation therapy](ADT), and RT + ST-ADT versus long-term (LT)-ADT. The most common treatment decisions in biochemically recurrent prostate cancer post-RP to use these tests include secondary RT versus secondary RT + ADT. These tools are not recommended for patients with very-low-risk prostate cancer. There are an extensive number of these tools created with substantial variability in quality of reporting and model design, endpoint selection, and quality and caliber of validation. It is recommended to use models that have high-quality and robust validation, ideally with high-quality, long-term clinical trial data, which usually comes from randomized trials and across multiple clinical trials" (NCCN, 2024).,For the ArteraAI Prostate test 2A recommendation, continuous scores may be used to provide more accurate risk stratification to inform shared decision-making; however, NCCN notes that "specific score cut points have not been published to date for specific treatment decisions." Predictive biomarker testing with ArteraAI in individuals with intermediate-risk prostate cancer can help to identify patients with a more favorable prognostic risk who "may consider the use of RT alone" without ST-ADT.

CPT/HCPCS:
0019UOncology, RNA, gene expression by whole transcriptome sequencing, formalin fixed paraffin embedded tissue or fresh frozen tissue, predictive algorithm reported as potential targets for therapeutic agents
0108UGastroenterology (Barrett's esophagus), whole slide digital imaging, including morphometric analysis, computer assisted quantitative immunolabeling of 9 protein biomarkers (p16, AMACR, p53, CD68, COX 2, CD45RO, HIF1a, HER 2, K20) and morphology, formalin fixed paraffin embedded tissue, algorithm reported as risk of progression to high grade dysplasia or cancer
0112UInfectious agent detection and identification, targeted sequence analysis (16S and 18S rRNA genes) with drug resistance gene
0152UInfectious disease (bacteria, fungi, parasites, and DNA viruses), microbial cell-free DNA, next generation sequencing, for significant positive pathogens
0164UGastroenterology (irritable bowel syndrome [IBS]), immunoassay for anti CdtB and anti vinculin antibodies, utilizing plasma, algorithm for elevated or not elevated qualitative results
0203UAutoimmune (inflammatory bowel disease), mRNA, gene expression profiling by quantitative RT-PCR, 17 genes (15 target and 2 reference genes), whole blood, reported as a continuous risk score and classification of inflammatory bowel disease aggressiveness
0216UNeurology (inherited ataxias), genomic DNA sequence analysis of 12 common genes including small sequence changes, deletions, duplications, short tandem repeat gene expansions, and variants in non uniquely mappable regions, blood or saliva, identification and categorization of genetic variants
0217UNeurology (inherited ataxias), genomic DNA sequence analysis of 51 genes including small sequence changes, deletions, duplications, short tandem repeat gene expansions, and variants in non uniquely mappable regions, blood or saliva, identification and categorization of genetic variants
0228UOncology (prostate), multianalyte molecular profile by photometric detection of macromolecules adsorbed on nanosponge array slides with machine learning, utilizing first morning voided urine, algorithm reported as likelihood of prostate cancer
0249UOncology (breast), semi-quantitative analysis of 32 phosphoproteins and protein analytes, includes laser capture microdissection, with algorithmic analysis and interpretative report
0315UOncology (cutaneous squamous cell carcinoma), mRNA gene expression profiling by RT-PCR of 40 genes (34 content and 6 housekeeping), utilizing formalin-fixed paraffin-embedded (FFPE) tissue, algorithm reported as a categorical risk result (ie, Class 1, Class 2A, Class 2B)
0329UOncology (neoplasia), exome and transcriptome sequence analysis for sequence variants, gene copy number amplifications and deletions, gene rearrangements, microsatellite instability and tumor mutational burden utilizing DNA and RNA from tumor with and DNA from normal blood or saliva for subtraction, report of clinically significant mutation(s) with therapy associations
0355UAPOL1 (apolipoprotein L1) (eg, chronic kidney disease), risk variants (G1, G2)
0362UOncology (papillary thyroid cancer), gene-expression profiling via targeted hybrid capture–enrichment RNA sequencing of 82 content genes and 10 housekeeping genes, fine needle aspirate or formalin-fixed paraffinembedded (FFPE) tissue, algorithm reported as one of three molecular subtype
0365UOncology (bladder), 10 protein biomarkers (A1AT, ANG, APOE, CA9, IL8, MMP9, MMP10, PAI1, SDC1 and VEGFA) by immunoassays, urine, diagnostic, algorithm including patient's age, race and gender reported as a probability of harboring urothelial cancer
0366UOncology (bladder), analysis of 10 protein biomarkers (A1AT, ANG, APOE, CA9, IL8, MMP9, MMP10, PAI1, SDC1 and VEGFA) by immunoassays, urine, algorithm reported as a probability of recurrent bladder cancer
0367UOncology (bladder), analysis of 10 protein biomarkers (A1AT, ANG, APOE, CA9, IL8, MMP9, MMP10, PAI1, SDC1 and VEGFA) by immunoassays, urine, diagnostic algorithm reported as a risk score for probability of rapid recurrence of recurrent or persistent cancer following transurethral resection
0368UOncology (colorectal cancer), evaluation for mutations of APC, BRAF, CTNNB1, KRAS, NRAS, PIK3CA, SMAD4, and TP53, and methylation markers (MYO1G, KCNQ5, C9ORF50, FLI1, CLIP4, ZNF132 and TWIST1), multiplex quantitative polymerase chain reaction (qPCR), circulating cell-free DNA (cfDNA), plasma, report of risk score for advanced adenoma or colorectal cancer
0371UInfectious agent detection by nucleic acid (DNA or RNA), genitourinary pathogen, semiquantitative identification, DNA from 16 bacterial organisms and 1 fungal organism, multiplex amplified probe technique via quantitative polymerase chain reaction (qPCR), urine
0372UInfectious disease (genitourinary pathogens), antibiotic-resistance gene detection, multiplex amplified probe technique, urine, reported as an antimicrobial stewardship risk score
0373UInfectious agent detection by nucleic acid (DNA and RNA), respiratory tract infection, 17 bacteria, 8 fungus, 13 virus, and 16 antibiotic-resistance genes, multiplex amplified probe technique, upper or lower respiratory specimen
0374UInfectious agent detection by nucleic acid (DNA or RNA), genitourinary pathogens, identification of 21 bacterial and fungal organisms and identification of 21 associated antibiotic-resistance genes, multiplex amplified probe technique, urine
0376UOncology (prostate cancer), image analysis of at least 128 histologic features and clinical factors, prognostic algorithm determining the risk of distant metastases, and prostate cancer-specific mortality, includes predictive algorithm to androgen deprivation-therapy response, if appropriate
0377UCardiovascular disease, quantification of advanced serum or plasma lipoprotein profile, by nuclear magnetic resonance (NMR) spectrometry with report of a lipoprotein profile (including 23 variables)
0380UDrug metabolism (adverse drug reactions and drug response), targeted sequence analysis, 20 gene variants and CYP2D6 deletion or duplication analysis with reported genotype and phenotype
0384UNephrology (chronic kidney disease), carboxymethyllysine, methylglyoxal hydroimidazolone, and carboxyethyl lysine by liquid chromatography with tandem mass spectrometry (LCMS/MS) and HbA1c and estimated glomerular filtration rate (GFR), with risk score reported for predictive progression to high-stage kidney disease
0385UNephrology (chronic kidney disease), apolipoprotein A4 (ApoA4), CD5 antigen-like (CD5L), and insulin-like growth factor binding protein 3 (IGFBP3) by enzyme-linked immunoassay (ELISA), plasma, algorithm combining results with HDL, estimated glomerular filtration rate (GFR) and clinical data reported as a risk score for developing diabetic kidney disease
0386UGastroenterology (Barrett’s esophagus), P16, RUNX3, HPP1, and FBN1 methylation analysis, prognostic and predictive algorithm reported as a risk score for progression to high-grade dysplasia or esophageal cancer
0390UObstetrics (preeclampsia), kinase insert domain receptor (KDR), Endoglin (ENG), and retinol-binding protein 4 (RBP4), by immunoassay, serum, algorithm reported as a risk score
0405UOncology (pancreatic), 59 methylation haplotype block markers, next-generation sequencing, plasma, reported as cancer signal detected or not detected
0406UOncology (lung), flow cytometry, sputum, 5 markers (meso-tetra [4-carboxyphenyl] porphyrin [TCPP], CD206, CD66b, CD3, CD19), algorithm reported as likelihood of lung cancer
0410UOncology (pancreatic), DNA, whole genome sequencing with 5-hydroxymethylcytosine enrichment, whole blood or plasma, algorithm reported as cancer detected or not detected
0415UCardiovascular disease (acute coronary syndrome [ACS]), IL-16, FAS, FASLigand, HGF, CTACK, EOTAXIN, and MCP-3 by immunoassay combined with age, sex, family history, and personal history of diabetes, blood, algorithm reported as a 5-year (deleted risk) score for ACS
81168CCND1/IGH (t(11;14)) (eg, mantle cell lymphoma) translocation analysis, major breakpoint, qualitative and quantitative, if performed
81229Cytogenomic constitutional (genome wide) microarray analysis; interrogation of genomic regions for copy number and single nucleotide polymorphism (SNP) variants, comparative genomic hybridization (CGH) microarray analysis.
81265Comparative analysis using Short Tandem Repeat (STR) markers; patient and comparative specimen (eg, pre transplant recipient and donor germline testing, post transplant non hematopoietic recipient germline [eg, buccal swab or other germline tissue sample] and donor testing, twin zygosity testing, or maternal cell contamination of fetal cells)
81277Cytogenomic neoplasia (genome wide) microarray analysis, interrogation of genomic regions for copy number and loss of heterozygosity variants for chromosomal abnormalities
81327SEPT9 (Septin9) (eg, colorectal cancer) promoter methylation analysis
81382HLA Class II typing, high resolution (ie, alleles or allele groups); one locus (eg, HLA DRB1, DRB3/4/5, DQB1, DQA1, DPB1, or DPA1), each
81401Molecular pathology procedure, Level 2 (eg, 2-10 SNPs, 1 methylated variant, or 1 somatic variant [typically using nonsequencing target variant analysis], or detection of a dynamic mutation disorder/triplet repeat) ABCC8 (ATP-binding cassette, sub-family C [CFTR/MRP], member 8) (eg, familial hyperinsulinism), common variants (eg, c.3898-9G>A [c.3992-9G>A], F1388del) ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) (eg, acquired imatinib resistance), T315I variant ACADM (acyl-CoA dehydrogenase, C-4 to C-12 straight chain, MCAD) (eg, medium chain acyl dehydrogenase deficiency), commons variants (eg, K304E, Y42H) ADRB2 (adrenergic beta-2 receptor surface) (eg, drug metabolism), common variants (eg, G16R, Q27E) APOB (apolipoprotein B) (eg, familial hypercholesterolemia type B), common variants (eg, R3500Q, R3500W) APOE (apolipoprotein E) (eg, hyperlipoproteinemia type III, cardiovascular disease, Alzheimer disease), common variants (eg, *2, *3, *4) CBFB/MYH11 (inv(16)) (eg, acute myeloid leukemia), qualitative, and quantitative, if performed CBS (cystathionine-beta-synthase) (eg, homocystinuria, cystathionine beta-synthase deficiency), common variants (eg, I278T, G307S) CFH/ARMS2 (complement factor H/age-related maculopathy susceptibility 2) (eg, macular degeneration), common variants (eg, Y402H [CFH], A69S [ARMS2]) DEK/NUP214 (t(6;9)) (eg, acute myeloid leukemia), translocation analysis, qualitative, and quantitative, if performed E2A/PBX1 (t(1;19)) (eg, acute lymphocytic leukemia), translocation analysis, qualitative, and quantitative, if performed EML4/ALK (inv(2)) (eg, non-small cell lung cancer), translocation or inversion analysis ETV6/RUNX1 (t(12;21)) (eg, acute lymphocytic leukemia), translocation analysis, qualitative, and quantitative, if performed EWSR1/ATF1 (t(12;22)) (eg, clear cell sarcoma), translocation analysis, qualitative, and quantitative, if performed EWSR1/ERG (t(21;22)) (eg, Ewing sarcoma/peripheral neuroectodermal tumor), translocation analysis, qualitative, and quantitative, if performed EWSR1/FLI1 (t(11;22)) (eg, Ewing sarcoma/peripheral neuroectodermal tumor), translocation analysis, qualitative, and quantitative, if performed EWSR1/WT1 (t(11;22)) (eg, desmoplastic small round cell tumor), translocation analysis, qualitative, and quantitative, if performed F11 (coagulation factor XI) (eg, coagulation disorder), common variants (eg, E117X [Type II], F283L [Type III], IVS14del14, and IVS14+1G>A [Type I]) FGFR3 (fibroblast growth factor receptor 3) (eg, achondroplasia, hypochondroplasia), common variants (eg, 1138G>A, 1138G>C, 1620C>A, 1620C>G) FIP1L1/PDGFRA (del[4q12]) (eg, imatinib-sensitive chronic eosinophilic leukemia), qualitative, and quantitative, if performed FLG (filaggrin) (eg, ichthyosis vulgaris), common variants (eg, R501X, 2282del4, R2447X, S3247X, 3702delG) FOXO1/PAX3 (t(2;13)) (eg, alveolar rhabdomyosarcoma), translocation analysis, qualitative, and quantitative, if performed FOXO1/PAX7 (t(1;13)) (eg, alveolar rhabdomyosarcoma), translocation analysis, qualitative, and quantitative, if performed FUS/DDIT3 (t(12;16)) (eg, myxoid liposarcoma), translocation analysis, qualitative, and quantitative, if performed GALC (galactosylceramidase) (eg, Krabbe disease), common variants (eg, c.857G>A, 30-kb deletion) GALT (galactose-1-phosphate uridylyltransferase) (eg, galactosemia), common variants (eg, Q188R, S135L, K285N, T138M, L195P, Y209C, IVS2-2A>G, P171S, del5kb, N314D, L218L/N314D) H19 (imprinted maternally expressed transcript [non-protein coding]) (eg, Beckwith-Wiedemann syndrome), methylation analysis IGH@/BCL2 (t(14;18)) (eg, follicular lymphoma), translocation analysis; single breakpoint (eg, major breakpoint region [MBR] or minor cluster region [mcr]), qualitative or quantitative (When both MBR and mcr breakpoints are performed, use 81278) KCNQ1OT1 (KCNQ1 overlapping transcript 1 [non-protein coding]) (eg, Beckwith-Wiedemann syndrome), methylation analysis LINC00518 (long intergenic non-protein coding RNA 518) (eg, melanoma), expression analysis LRRK2 (leucine-rich repeat kinase 2) (eg, Parkinson disease), common variants (eg, R1441G, G2019S, I2020T) MED12 (mediator complex subunit 12) (eg, FG syndrome type 1, Lujan syndrome), common variants (eg, R961W, N1007S) MEG3/DLK1 (maternally expressed 3 [non-protein coding]/delta-like 1 homolog [Drosophila]) (eg, intrauterine growth retardation), methylation analysis MLL/AFF1 (t(4;11)) (eg, acute lymphoblastic leukemia), translocation analysis, qualitative, and quantitative, if performed MLL/MLLT3 (t(9;11)) (eg, acute myeloid leukemia), translocation analysis, qualitative, and quantitative, if performed MT-ATP6 (mitochondrially encoded ATP synthase 6) (eg, neuropathy with ataxia and retinitis pigmentosa [NARP], Leigh syndrome), common variants (eg, m.8993T>G, m.8993T>C) MT-ND4, MT-ND6 (mitochondrially encoded NADH dehydrogenase 4, mitochondrially encoded NADH dehydrogenase 6) (eg, Leber hereditary optic neuropathy [LHON]), common variants (eg, m.11778G>A, m.3460G>A, m.14484T>C) MT-ND5 (mitochondrially encoded tRNA leucine 1 [UUA/G], mitochondrially encoded NADH dehydrogenase 5) (eg, mitochondrial encephalopathy with lactic acidosis and stroke-like episodes [MELAS]), common variants (eg, m.3243A>G, m.3271T>C, m.3252A>G, m.13513G>A) MT-RNR1 (mitochondrially encoded 12S RNA) (eg, nonsyndromic hearing loss), common variants (eg, m.1555A>G, m.1494C>T) MT-TK (mitochondrially encoded tRNA lysine) (eg, myoclonic epilepsy with ragged-red fibers [MERRF]), common variants (eg, m.8344A>G, m.8356T>C) MT-TL1 (mitochondrially encoded tRNA leucine 1 [UUA/G]) (eg, diabetes and hearing loss), common variants (eg, m.3243A>G, m.14709 T>C) MT-TL1 MT-TS1, MT-RNR1 (mitochondrially encoded tRNA serine 1 [UCN], mitochondrially encoded 12S RNA) (eg, nonsyndromic sensorineural deafness [including aminoglycoside-induced nonsyndromic deafness]), common variants (eg, m.7445A>G, m.1555A>G) MUTYH (mutY homolog [E. coli]) (eg, MYH-associated polyposis), common variants (eg, Y165C, G382D) NOD2 (nucleotide-binding oligomerization domain containing 2) (eg, Crohn's disease, Blau syndrome), common variants (eg, SNP 8, SNP 12, SNP 13) NPM1/ALK (t(2;5)) (eg, anaplastic large cell lymphoma), translocation analysis PAX8/PPARG (t(2;3) (q13;p25)) (eg, follicular thyroid carcinoma), translocation analysis PRAME (preferentially expressed antigen in melanoma) (eg, melanoma), expression analysis PRSS1 (protease, serine, 1 [trypsin 1]) (eg, hereditary pancreatitis), common variants (eg, N29I, A16V, R122H) PYGM (phosphorylase, glycogen, muscle) (eg, glycogen storage disease type V, McArdle disease), common variants (eg, R50X, G205S) RUNX1/RUNX1T1 (t(8;21)) (eg, acute myeloid leukemia) translocation analysis, qualitative, and quantitative, if performed SS18/SSX1 (t(X;18)) (eg, synovial sarcoma), translocation analysis, qualitative, and quantitative, if performed SS18/SSX2 (t(X;18)) (eg, synovial sarcoma), translocation analysis, qualitative, and quantitative, if performed VWF (von Willebrand factor) (eg, von Willebrand disease type 2N), common variants (eg, T791M, R816W, R854Q)
81479Unlisted molecular pathology procedure
81529Oncology (cutaneous melanoma), mRNA, gene expression profiling by real time RT PCR of 31 genes (28 content and 3 housekeeping), utilizing formalin fixed paraffin embedded tissue, algorithm reported as recurrence risk, including likelihood of sentinel lymph node metastasis
82397Chemiluminescent assay
82784Gammaglobulin (immunoglobulin); IgA, IgD, IgG, IgM, each
83520Immunoassay for analyte other than infectious agent antibody or infectious agent antigen; quantitative, not otherwise specified
84999Unlisted chemistry procedure
86021Antibody identification; leukocyte antibodies
86141C reactive protein; high sensitivity (hsCRP)
86255Fluorescent noninfectious agent antibody; screen, each antibody
87045Culture, bacterial; stool, aerobic, with isolation and preliminary examination (eg, KIA, LIA), Salmonella and Shigella species
87046Culture, bacterial; stool, aerobic, additional pathogens, isolation and presumptive identification of isolates, each plate
87075Culture, bacterial; any source, except blood, anaerobic with isolation and presumptive identification of isolates
87102Culture, fungi (mold or yeast) isolation, with presumptive identification of isolates; other source (except blood)
87177Ova and parasites, direct smears, concentration and identification
87209Smear, primary source with interpretation; complex special stain (eg, trichrome, iron hemotoxylin) for ova and parasites
87328Infectious agent antigen detection by immunoassay technique, (eg, enzyme immunoassay [EIA], enzyme linked immunosorbent assay [ELISA], fluorescence immunoassay [FIA], immunochemiluminometric assay [IMCA]) qualitative or semiquantitative; cryptosporidium
87329Infectious agent antigen detection by immunoassay technique, (eg, enzyme immunoassay [EIA], enzyme linked immunosorbent assay [ELISA], fluorescence immunoassay [FIA], immunochemiluminometric assay [IMCA]) qualitative or semiquantitative; giardia
87336Infectious agent antigen detection by immunoassay technique, (eg, enzyme immunoassay [EIA], enzyme linked immunosorbent assay [ELISA], fluorescence immunoassay [FIA], immunochemiluminometric assay [IMCA]) qualitative or semiquantitative; Entamoeba histolytica dispar group
87798Infectious agent detection by nucleic acid (DNA or RNA), not otherwise specified; amplified probe technique, each organism
88356Morphometric analysis; nerve

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